With extension tubes on wide-angles there's so little difference between minimum and maximum focus distance that AF doesn't even matter. Also for a lot of subjects I already know I want max magnification so I have closest possible focus. More generally, if shooting in the field, I'd pre-set focus then move the camera back and forth as needed.
Also the look of a wide-angle on extension tubes gives a totally different photo than you can get with the typical 100mm macro. I had the 100/2.8 (pre-USM!) then the 180/3.5 and used them a fair amount, but a 35mm or wider lens on extension tubes gives an utterly different look. You can have your bee on your flower but then also have the sky, the alpine meadow, the mountains in the background, all quite recognizable as DOF also increases substantially. I mean, the background is way out of focus, but still totally recognizable. In contrast, 180mm macro shots could all be in your back yard or even in your studio for all anyone can tell. It's as important a distinction as there is between shooting a portrait with 180mm vs. 35mm.